diff --git a/vllm/model_executor/models/deepseek_mtp.py b/vllm/model_executor/models/deepseek_mtp.py
index f73d9f9c3ef..ff63f9c3617 100644
--- a/vllm/model_executor/models/deepseek_mtp.py
+++ b/vllm/model_executor/models/deepseek_mtp.py
@@ -169,6 +169,21 @@ class DeepSeekMultiTokenPredictor(nn.Module):
                     if mla_attn is not None and hasattr(mla_attn, "skip_topk"):
                         mla_attn.skip_topk = skip
 
+    def compact_topk_indices(self, slot_ids: torch.Tensor):
+        """Gather the top-k index rows at ``slot_ids`` to the front of the buffer."""
+        num_slots = slot_ids.numel()
+        for layer in self.layers.values():
+            mtp_block = getattr(layer, "mtp_block", None)
+            if mtp_block is not None:
+                self_attn = getattr(mtp_block, "self_attn", None)
+                if self_attn is not None:
+                    mla_attn = getattr(self_attn, "mla_attn", None)
+                    if mla_attn is not None and hasattr(
+                        mla_attn, "topk_indices_buffer"
+                    ):
+                        topk_indices_buffer = mla_attn.topk_indices_buffer
+                        topk_indices_buffer[:num_slots] = topk_indices_buffer[slot_ids]
+
     def embed_input_ids(self, input_ids: torch.Tensor) -> torch.Tensor:
         return self.embed_tokens(input_ids)
 
diff --git a/vllm/models/deepseek_v32/nvidia/mtp.py b/vllm/models/deepseek_v32/nvidia/mtp.py
index 0efa1ac7a7e..118f27459bb 100644
--- a/vllm/models/deepseek_v32/nvidia/mtp.py
+++ b/vllm/models/deepseek_v32/nvidia/mtp.py
@@ -130,6 +130,15 @@ class DeepseekV32MultiTokenPredictor(nn.Module):
             if self_attn is not None and hasattr(self_attn, "skip_topk"):
                 self_attn.skip_topk = skip
 
+    def compact_topk_indices(self, slot_ids: torch.Tensor):
+        """Gather the top-k index rows at ``slot_ids`` to the front of the buffer."""
+        num_slots = slot_ids.numel()
+        for layer in self.layers.values():
+            self_attn = getattr(layer.mtp_block, "self_attn", None)
+            if self_attn is not None and hasattr(self_attn, "topk_indices_buffer"):
+                topk_indices_buffer = self_attn.topk_indices_buffer
+                topk_indices_buffer[:num_slots] = topk_indices_buffer[slot_ids]
+
     def embed_input_ids(self, input_ids: torch.Tensor) -> torch.Tensor:
         return self.embed_tokens(input_ids)
 
diff --git a/vllm/v1/spec_decode/llm_base_proposer.py b/vllm/v1/spec_decode/llm_base_proposer.py
index 4eaf6e9e4f8..f5e4c27b4fb 100644
--- a/vllm/v1/spec_decode/llm_base_proposer.py
+++ b/vllm/v1/spec_decode/llm_base_proposer.py
@@ -560,6 +560,9 @@ class SpecDecodeBaseProposer:
         # and read the indices that step 0 just wrote into the shared buffer.
         if self._share_mtp_indices and hasattr(self.model.model, "set_skip_topk"):
             self.model.model.set_skip_topk(True)
+            # The topk indices were written for each query token in the multi-token
+            # batch. Compact the topk indices for each request's last token.
+            self.model.model.compact_topk_indices(token_indices_to_sample)
 
         sample_hidden_states = last_hidden_states[token_indices_to_sample]