diff --git a/.github/workflows/scripts/run_ci_command.py b/.github/workflows/scripts/run_ci_command.py
index 7880fc5568a..5bf196bb53f 100644
--- a/.github/workflows/scripts/run_ci_command.py
+++ b/.github/workflows/scripts/run_ci_command.py
@@ -381,6 +381,7 @@ def create_build_payload(
         "pull_request_base_branch": pr["base"]["ref"],
         "pull_request_repository": pr["head"]["repo"]["clone_url"],
         "pull_request_labels": [label["name"] for label in pr["labels"]],
+        "ignore_pipeline_branch_filters": True,
         "env": {
             "VLLM_CI_GITHUB_COMMENT_ID": str(comment_id),
             "VLLM_CI_TRIGGERED_BY": actor,
diff --git a/.github/workflows/scripts/test_run_ci_command.py b/.github/workflows/scripts/test_run_ci_command.py
index e691438d6af..edbfff3f5f0 100644
--- a/.github/workflows/scripts/test_run_ci_command.py
+++ b/.github/workflows/scripts/test_run_ci_command.py
@@ -280,6 +280,7 @@ class RunCiCommandTest(unittest.TestCase):
                 "pull_request_base_branch": "main",
                 "pull_request_repository": ("https://github.com/contributor/vllm.git"),
                 "pull_request_labels": ["ready", "v1"],
+                "ignore_pipeline_branch_filters": True,
                 "env": {
                     "VLLM_CI_GITHUB_COMMENT_ID": "99",
                     "VLLM_CI_TRIGGERED_BY": "reviewer",